jhhlp_004172 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_004172

Uncharacterized protein. (124 aa)

Predicted Functional Partners:

jhhlp_001023

0.909

jhhlp_003659

0.903

jhhlp_004173

0.899

jhhlp_002362

0.895

jhhlp_000925

0.828

jhhlp_007817

0.825

jhhlp_007417

0.794

jhhlp_004238

0.784

jhhlp_007659

0.735

jhhlp_004011

0.650

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000925	jhhlp_002362	A0A2N3NJV5	A0A2N3NDV5	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.543
jhhlp_000925	jhhlp_004172	A0A2N3NJV5	A0A2N3NAS4	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.828
jhhlp_000925	jhhlp_004173	A0A2N3NJV5	A0A2N3NAT2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.828
jhhlp_001023	jhhlp_002362	A0A2N3NK79	A0A2N3NDV5	Histidine biosynthesis trifunctional protein.	Uncharacterized protein.	0.996
jhhlp_001023	jhhlp_003659	A0A2N3NK79	A0A2N3N9C4	Histidine biosynthesis trifunctional protein.	S1 motif domain-containing protein.	0.541
jhhlp_001023	jhhlp_004172	A0A2N3NK79	A0A2N3NAS4	Histidine biosynthesis trifunctional protein.	Uncharacterized protein.	0.909
jhhlp_001023	jhhlp_004173	A0A2N3NK79	A0A2N3NAT2	Histidine biosynthesis trifunctional protein.	Uncharacterized protein.	0.909
jhhlp_001023	jhhlp_007417	A0A2N3NK79	A0A2N3N2M2	Histidine biosynthesis trifunctional protein.	Tr-type G domain-containing protein.	0.487
jhhlp_001023	jhhlp_007659	A0A2N3NK79	A0A2N3N083	Histidine biosynthesis trifunctional protein.	eIF2B_5 domain-containing protein.	0.543
jhhlp_002362	jhhlp_000925	A0A2N3NDV5	A0A2N3NJV5	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.543
jhhlp_002362	jhhlp_001023	A0A2N3NDV5	A0A2N3NK79	Uncharacterized protein.	Histidine biosynthesis trifunctional protein.	0.996
jhhlp_002362	jhhlp_004172	A0A2N3NDV5	A0A2N3NAS4	Uncharacterized protein.	Uncharacterized protein.	0.895
jhhlp_002362	jhhlp_004173	A0A2N3NDV5	A0A2N3NAT2	Uncharacterized protein.	Uncharacterized protein.	0.895
jhhlp_003659	jhhlp_001023	A0A2N3N9C4	A0A2N3NK79	S1 motif domain-containing protein.	Histidine biosynthesis trifunctional protein.	0.541
jhhlp_003659	jhhlp_004011	A0A2N3N9C4	A0A2N3NAD0	S1 motif domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.783
jhhlp_003659	jhhlp_004172	A0A2N3N9C4	A0A2N3NAS4	S1 motif domain-containing protein.	Uncharacterized protein.	0.903
jhhlp_003659	jhhlp_004173	A0A2N3N9C4	A0A2N3NAT2	S1 motif domain-containing protein.	Uncharacterized protein.	0.903
jhhlp_003659	jhhlp_004238	A0A2N3N9C4	A0A2N3NB11	S1 motif domain-containing protein.	Uncharacterized protein.	0.993
jhhlp_003659	jhhlp_007417	A0A2N3N9C4	A0A2N3N2M2	S1 motif domain-containing protein.	Tr-type G domain-containing protein.	0.999
jhhlp_003659	jhhlp_007659	A0A2N3N9C4	A0A2N3N083	S1 motif domain-containing protein.	eIF2B_5 domain-containing protein.	0.999