jhhlp_004480 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_004480

Uncharacterized protein. (1654 aa)

Predicted Functional Partners:

jhhlp_001008

0.670

jhhlp_003656

0.668

jhhlp_001139

0.650

jhhlp_006134

0.647

jhhlp_000187

0.635

jhhlp_004673

0.633

jhhlp_002465

0.627

jhhlp_003418

0.618

jhhlp_004568

0.610

jhhlp_007200

0.607

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000187	jhhlp_001139	A0A2N3NK82	A0A2N3NHC8	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
jhhlp_000187	jhhlp_002465	A0A2N3NK82	A0A2N3NE47	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	UBA domain-containing protein.	0.488
jhhlp_000187	jhhlp_003418	A0A2N3NK82	A0A2N3N8P6	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
jhhlp_000187	jhhlp_004480	A0A2N3NK82	A0A2N3NBT8	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.635
jhhlp_000187	jhhlp_006134	A0A2N3NK82	A0A2N3N515	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.999
jhhlp_001008	jhhlp_002465	A0A2N3NK32	A0A2N3NE47	WD_REPEATS_REGION domain-containing protein.	UBA domain-containing protein.	0.817
jhhlp_001008	jhhlp_003656	A0A2N3NK32	A0A2N3N9C1	WD_REPEATS_REGION domain-containing protein.	B30.2/SPRY domain-containing protein.	0.999
jhhlp_001008	jhhlp_004480	A0A2N3NK32	A0A2N3NBT8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.670
jhhlp_001008	jhhlp_007200	A0A2N3NK32	A0A2N3N216	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.907
jhhlp_001139	jhhlp_000187	A0A2N3NHC8	A0A2N3NK82	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
jhhlp_001139	jhhlp_003418	A0A2N3NHC8	A0A2N3N8P6	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
jhhlp_001139	jhhlp_004480	A0A2N3NHC8	A0A2N3NBT8	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.650
jhhlp_001139	jhhlp_006134	A0A2N3NHC8	A0A2N3N515	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999
jhhlp_001139	jhhlp_007200	A0A2N3NHC8	A0A2N3N216	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Ubiquitin-like domain-containing protein.	0.491
jhhlp_002465	jhhlp_000187	A0A2N3NE47	A0A2N3NK82	UBA domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.488
jhhlp_002465	jhhlp_001008	A0A2N3NE47	A0A2N3NK32	UBA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.817
jhhlp_002465	jhhlp_003656	A0A2N3NE47	A0A2N3N9C1	UBA domain-containing protein.	B30.2/SPRY domain-containing protein.	0.790
jhhlp_002465	jhhlp_004480	A0A2N3NE47	A0A2N3NBT8	UBA domain-containing protein.	Uncharacterized protein.	0.627
jhhlp_002465	jhhlp_004568	A0A2N3NE47	A0A2N3NBY1	UBA domain-containing protein.	Uncharacterized protein.	0.507
jhhlp_002465	jhhlp_007200	A0A2N3NE47	A0A2N3N216	UBA domain-containing protein.	Ubiquitin-like domain-containing protein.	0.678