jhhlp_001939 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_001939

Uncharacterized protein. (476 aa)

Predicted Functional Partners:

jhhlp_003635

0.999

jhhlp_004606

0.999

jhhlp_005616

0.998

jhhlp_006424

0.996

jhhlp_001190

0.994

jhhlp_006175

0.990

jhhlp_001286

0.983

jhhlp_001007

0.978

jhhlp_005550

0.969

jhhlp_004485

0.953

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_001007	jhhlp_001190	A0A2N3NK19	A0A2N3NHF6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Rtt106 domain-containing protein.	0.977
jhhlp_001007	jhhlp_001286	A0A2N3NK19	A0A2N3NHS5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.476
jhhlp_001007	jhhlp_001939	A0A2N3NK19	A0A2N3NCN5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.978
jhhlp_001007	jhhlp_003635	A0A2N3NK19	A0A2N3N9H0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.983
jhhlp_001007	jhhlp_004485	A0A2N3NK19	A0A2N3NBX0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.998
jhhlp_001007	jhhlp_004606	A0A2N3NK19	A0A2N3NC96	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.973
jhhlp_001007	jhhlp_005550	A0A2N3NK19	A0A2N3N3G6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.999
jhhlp_001007	jhhlp_005616	A0A2N3NK19	A0A2N3N3M7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD_REPEATS_REGION domain-containing protein.	0.705
jhhlp_001007	jhhlp_006175	A0A2N3NK19	A0A2N3N554	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.987
jhhlp_001007	jhhlp_006424	A0A2N3NK19	A0A2N3N5W2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Plus3 domain-containing protein.	0.954
jhhlp_001190	jhhlp_001007	A0A2N3NHF6	A0A2N3NK19	Rtt106 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.977
jhhlp_001190	jhhlp_001286	A0A2N3NHF6	A0A2N3NHS5	Rtt106 domain-containing protein.	Uncharacterized protein.	0.996
jhhlp_001190	jhhlp_001939	A0A2N3NHF6	A0A2N3NCN5	Rtt106 domain-containing protein.	Uncharacterized protein.	0.994
jhhlp_001190	jhhlp_003635	A0A2N3NHF6	A0A2N3N9H0	Rtt106 domain-containing protein.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.995
jhhlp_001190	jhhlp_004485	A0A2N3NHF6	A0A2N3NBX0	Rtt106 domain-containing protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.988
jhhlp_001190	jhhlp_004606	A0A2N3NHF6	A0A2N3NC96	Rtt106 domain-containing protein.	Uncharacterized protein.	0.997
jhhlp_001190	jhhlp_005550	A0A2N3NHF6	A0A2N3N3G6	Rtt106 domain-containing protein.	RPOLD domain-containing protein.	0.978
jhhlp_001190	jhhlp_005616	A0A2N3NHF6	A0A2N3N3M7	Rtt106 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.786
jhhlp_001190	jhhlp_006175	A0A2N3NHF6	A0A2N3N554	Rtt106 domain-containing protein.	Uncharacterized protein.	0.999
jhhlp_001190	jhhlp_006424	A0A2N3NHF6	A0A2N3N5W2	Rtt106 domain-containing protein.	Plus3 domain-containing protein.	0.990