jhhlp_001530 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_001530

NUC173 domain-containing protein. (1261 aa)

Predicted Functional Partners:

jhhlp_003636

0.998

jhhlp_004299

0.995

jhhlp_002610

0.995

jhhlp_001315

0.995

jhhlp_007215

0.994

jhhlp_001477

0.990

jhhlp_003503

0.988

jhhlp_008468

0.982

jhhlp_002657

0.980

jhhlp_001186

0.980

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_001186	jhhlp_001315	A0A2N3NHR9	A0A2N3NHT1	Uncharacterized protein.	G-patch domain-containing protein.	0.901
jhhlp_001186	jhhlp_001477	A0A2N3NHR9	A0A2N3NI98	Uncharacterized protein.	Nop domain-containing protein.	0.894
jhhlp_001186	jhhlp_001530	A0A2N3NHR9	A0A2N3NIJ6	Uncharacterized protein.	NUC173 domain-containing protein.	0.980
jhhlp_001186	jhhlp_002610	A0A2N3NHR9	A0A2N3NEJ9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.822
jhhlp_001186	jhhlp_002657	A0A2N3NHR9	A0A2N3NEN8	Uncharacterized protein.	Utp12 domain-containing protein.	0.824
jhhlp_001186	jhhlp_003503	A0A2N3NHR9	A0A2N3N8X9	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.898
jhhlp_001186	jhhlp_003636	A0A2N3NHR9	A0A2N3N9A4	Uncharacterized protein.	Uncharacterized protein.	0.887
jhhlp_001186	jhhlp_004299	A0A2N3NHR9	A0A2N3NB70	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.855
jhhlp_001186	jhhlp_007215	A0A2N3NHR9	A0A2N3N217	Uncharacterized protein.	CBF domain-containing protein.	0.587
jhhlp_001186	jhhlp_008468	A0A2N3NHR9	A0A2N3MY43	Uncharacterized protein.	Uncharacterized protein.	0.746
jhhlp_001315	jhhlp_001186	A0A2N3NHT1	A0A2N3NHR9	G-patch domain-containing protein.	Uncharacterized protein.	0.901
jhhlp_001315	jhhlp_001477	A0A2N3NHT1	A0A2N3NI98	G-patch domain-containing protein.	Nop domain-containing protein.	0.998
jhhlp_001315	jhhlp_001530	A0A2N3NHT1	A0A2N3NIJ6	G-patch domain-containing protein.	NUC173 domain-containing protein.	0.995
jhhlp_001315	jhhlp_002610	A0A2N3NHT1	A0A2N3NEJ9	G-patch domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
jhhlp_001315	jhhlp_002657	A0A2N3NHT1	A0A2N3NEN8	G-patch domain-containing protein.	Utp12 domain-containing protein.	0.997
jhhlp_001315	jhhlp_003503	A0A2N3NHT1	A0A2N3N8X9	G-patch domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
jhhlp_001315	jhhlp_003636	A0A2N3NHT1	A0A2N3N9A4	G-patch domain-containing protein.	Uncharacterized protein.	0.998
jhhlp_001315	jhhlp_004299	A0A2N3NHT1	A0A2N3NB70	G-patch domain-containing protein.	Bms1-type G domain-containing protein.	0.943
jhhlp_001315	jhhlp_007215	A0A2N3NHT1	A0A2N3N217	G-patch domain-containing protein.	CBF domain-containing protein.	0.999
jhhlp_001315	jhhlp_008468	A0A2N3NHT1	A0A2N3MY43	G-patch domain-containing protein.	Uncharacterized protein.	0.977