jhhlp_000892 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_000892

Uncharacterized protein. (586 aa)

Predicted Functional Partners:

jhhlp_006145

0.887

jhhlp_000997

0.857

NOP7

0.793

jhhlp_003851

0.775

jhhlp_000879

0.767

jhhlp_003293

0.763

jhhlp_002242

0.748

jhhlp_004124

0.742

jhhlp_004238

0.734

jhhlp_000105

0.734

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NOP7	jhhlp_000879	A0A2N3N774	A0A2N3NJT4	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	W2 domain-containing protein.	0.445
NOP7	jhhlp_000892	A0A2N3N774	A0A2N3NJT6	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.793
NOP7	jhhlp_004238	A0A2N3N774	A0A2N3NB11	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.764
jhhlp_000105	jhhlp_000892	A0A2N3NLM4	A0A2N3NJT6	Sm domain-containing protein.	Uncharacterized protein.	0.734
jhhlp_000105	jhhlp_000997	A0A2N3NLM4	A0A2N3NK08	Sm domain-containing protein.	Tr-type G domain-containing protein.	0.990
jhhlp_000105	jhhlp_002242	A0A2N3NLM4	A0A2N3NDG2	Sm domain-containing protein.	ENDO3c domain-containing protein.	0.899
jhhlp_000105	jhhlp_003851	A0A2N3NLM4	A0A2N3NA05	Sm domain-containing protein.	Uncharacterized protein.	0.579
jhhlp_000105	jhhlp_004124	A0A2N3NLM4	A0A2N3NAS9	Sm domain-containing protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.855
jhhlp_000105	jhhlp_006145	A0A2N3NLM4	A0A2N3N524	Sm domain-containing protein.	Uncharacterized protein.	0.967
jhhlp_000879	NOP7	A0A2N3NJT4	A0A2N3N774	W2 domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.445
jhhlp_000879	jhhlp_000892	A0A2N3NJT4	A0A2N3NJT6	W2 domain-containing protein.	Uncharacterized protein.	0.767
jhhlp_000879	jhhlp_003293	A0A2N3NJT4	A0A2N3NGH9	W2 domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.594
jhhlp_000879	jhhlp_004238	A0A2N3NJT4	A0A2N3NB11	W2 domain-containing protein.	Uncharacterized protein.	0.454
jhhlp_000892	NOP7	A0A2N3NJT6	A0A2N3N774	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.793
jhhlp_000892	jhhlp_000105	A0A2N3NJT6	A0A2N3NLM4	Uncharacterized protein.	Sm domain-containing protein.	0.734
jhhlp_000892	jhhlp_000879	A0A2N3NJT6	A0A2N3NJT4	Uncharacterized protein.	W2 domain-containing protein.	0.767
jhhlp_000892	jhhlp_000997	A0A2N3NJT6	A0A2N3NK08	Uncharacterized protein.	Tr-type G domain-containing protein.	0.857
jhhlp_000892	jhhlp_002242	A0A2N3NJT6	A0A2N3NDG2	Uncharacterized protein.	ENDO3c domain-containing protein.	0.748
jhhlp_000892	jhhlp_003293	A0A2N3NJT6	A0A2N3NGH9	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.763
jhhlp_000892	jhhlp_003851	A0A2N3NJT6	A0A2N3NA05	Uncharacterized protein.	Uncharacterized protein.	0.775