jhhlp_000453 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_000453

Sld5 domain-containing protein. (182 aa)

Predicted Functional Partners:

jhhlp_003865

0.991

jhhlp_005448

0.978

jhhlp_003428

0.976

jhhlp_007397

0.974

jhhlp_006622

0.974

jhhlp_001346

0.974

jhhlp_001335

0.973

jhhlp_007697

0.967

jhhlp_006101

0.961

jhhlp_003351

0.958

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000453	jhhlp_001335	A0A2N3NL39	A0A2N3NHV1	Sld5 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.973
jhhlp_000453	jhhlp_001346	A0A2N3NL39	A0A2N3NHZ0	Sld5 domain-containing protein.	Sld5 domain-containing protein.	0.974
jhhlp_000453	jhhlp_003351	A0A2N3NL39	A0A2N3NGJ5	Sld5 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.958
jhhlp_000453	jhhlp_003428	A0A2N3NL39	A0A2N3N8Q5	Sld5 domain-containing protein.	Uncharacterized protein.	0.976
jhhlp_000453	jhhlp_003865	A0A2N3NL39	A0A2N3NA08	Sld5 domain-containing protein.	DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.	0.991
jhhlp_000453	jhhlp_005448	A0A2N3NL39	A0A2N3N716	Sld5 domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.978
jhhlp_000453	jhhlp_006101	A0A2N3NL39	A0A2N3N4Z3	Sld5 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.961
jhhlp_000453	jhhlp_006622	A0A2N3NL39	A0A2N3N6D5	Sld5 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.974
jhhlp_000453	jhhlp_007397	A0A2N3NL39	A0A2N3N2K2	Sld5 domain-containing protein.	DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family.	0.974
jhhlp_000453	jhhlp_007697	A0A2N3NL39	A0A2N3N0A8	Sld5 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.967
jhhlp_001335	jhhlp_000453	A0A2N3NHV1	A0A2N3NL39	DNA helicase; Belongs to the MCM family.	Sld5 domain-containing protein.	0.973
jhhlp_001335	jhhlp_001346	A0A2N3NHV1	A0A2N3NHZ0	DNA helicase; Belongs to the MCM family.	Sld5 domain-containing protein.	0.954
jhhlp_001335	jhhlp_003351	A0A2N3NHV1	A0A2N3NGJ5	DNA helicase; Belongs to the MCM family.	DNA helicase; Belongs to the MCM family.	0.999
jhhlp_001335	jhhlp_003428	A0A2N3NHV1	A0A2N3N8Q5	DNA helicase; Belongs to the MCM family.	Uncharacterized protein.	0.999
jhhlp_001335	jhhlp_003865	A0A2N3NHV1	A0A2N3NA08	DNA helicase; Belongs to the MCM family.	DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.	0.965
jhhlp_001335	jhhlp_005448	A0A2N3NHV1	A0A2N3N716	DNA helicase; Belongs to the MCM family.	Zn(2)-C6 fungal-type domain-containing protein.	0.951
jhhlp_001335	jhhlp_006101	A0A2N3NHV1	A0A2N3N4Z3	DNA helicase; Belongs to the MCM family.	DNA helicase; Belongs to the MCM family.	0.999
jhhlp_001335	jhhlp_006622	A0A2N3NHV1	A0A2N3N6D5	DNA helicase; Belongs to the MCM family.	DNA helicase; Belongs to the MCM family.	0.999
jhhlp_001335	jhhlp_007397	A0A2N3NHV1	A0A2N3N2K2	DNA helicase; Belongs to the MCM family.	DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family.	0.954
jhhlp_001335	jhhlp_007697	A0A2N3NHV1	A0A2N3N0A8	DNA helicase; Belongs to the MCM family.	DNA helicase; Belongs to the MCM family.	0.999