jhhlp_000063 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_000063

RING-type domain-containing protein. (174 aa)

Predicted Functional Partners:

jhhlp_006272

0.982

jhhlp_008460

0.980

jhhlp_000633

0.978

jhhlp_003579

0.970

jhhlp_001102

0.896

jhhlp_000205

0.873

jhhlp_006507

0.857

jhhlp_006391

0.848

jhhlp_007056

0.846

jhhlp_005150

0.845

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000063	jhhlp_000205	A0A2N3NLP2	A0A2N3NK85	RING-type domain-containing protein.	Pex14_N domain-containing protein.	0.873
jhhlp_000063	jhhlp_000633	A0A2N3NLP2	A0A2N3NJ06	RING-type domain-containing protein.	Uncharacterized protein.	0.978
jhhlp_000063	jhhlp_001102	A0A2N3NLP2	A0A2N3NH67	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.896
jhhlp_000063	jhhlp_003579	A0A2N3NLP2	A0A2N3N950	RING-type domain-containing protein.	Pex2_Pex12 domain-containing protein.	0.970
jhhlp_000063	jhhlp_005150	A0A2N3NLP2	A0A2N3N700	RING-type domain-containing protein.	SH3 domain-containing protein.	0.845
jhhlp_000063	jhhlp_006272	A0A2N3NLP2	A0A2N3N5G2	RING-type domain-containing protein.	SCP2 domain-containing protein.	0.982
jhhlp_000063	jhhlp_006391	A0A2N3NLP2	A0A2N3N5Q7	RING-type domain-containing protein.	Uncharacterized protein.	0.848
jhhlp_000063	jhhlp_006507	A0A2N3NLP2	A0A2N3N633	RING-type domain-containing protein.	AAA domain-containing protein.	0.857
jhhlp_000063	jhhlp_007056	A0A2N3NLP2	A0A2N3N1J6	RING-type domain-containing protein.	Uncharacterized protein.	0.846
jhhlp_000063	jhhlp_008460	A0A2N3NLP2	A0A2N3MY38	RING-type domain-containing protein.	Uncharacterized protein.	0.980
jhhlp_000205	jhhlp_000063	A0A2N3NK85	A0A2N3NLP2	Pex14_N domain-containing protein.	RING-type domain-containing protein.	0.873
jhhlp_000205	jhhlp_000633	A0A2N3NK85	A0A2N3NJ06	Pex14_N domain-containing protein.	Uncharacterized protein.	0.985
jhhlp_000205	jhhlp_001102	A0A2N3NK85	A0A2N3NH67	Pex14_N domain-containing protein.	TPR_REGION domain-containing protein.	0.995
jhhlp_000205	jhhlp_003579	A0A2N3NK85	A0A2N3N950	Pex14_N domain-containing protein.	Pex2_Pex12 domain-containing protein.	0.962
jhhlp_000205	jhhlp_005150	A0A2N3NK85	A0A2N3N700	Pex14_N domain-containing protein.	SH3 domain-containing protein.	0.974
jhhlp_000205	jhhlp_006272	A0A2N3NK85	A0A2N3N5G2	Pex14_N domain-containing protein.	SCP2 domain-containing protein.	0.987
jhhlp_000205	jhhlp_006391	A0A2N3NK85	A0A2N3N5Q7	Pex14_N domain-containing protein.	Uncharacterized protein.	0.995
jhhlp_000205	jhhlp_006507	A0A2N3NK85	A0A2N3N633	Pex14_N domain-containing protein.	AAA domain-containing protein.	0.946
jhhlp_000205	jhhlp_007056	A0A2N3NK85	A0A2N3N1J6	Pex14_N domain-containing protein.	Uncharacterized protein.	0.913
jhhlp_000205	jhhlp_008460	A0A2N3NK85	A0A2N3MY38	Pex14_N domain-containing protein.	Uncharacterized protein.	0.986