STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jhhlp_000141Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (403 aa)    
Predicted Functional Partners:
jhhlp_003266
Tr-type G domain-containing protein.
   
 
 0.991
jhhlp_007176
Uncharacterized protein.
  
 
 0.940
jhhlp_006030
WD_REPEATS_REGION domain-containing protein.
    
 
 0.939
jhhlp_001423
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.939
jhhlp_002079
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.914
jhhlp_006850
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
 
 0.912
jhhlp_008316
Ribosomal_S10 domain-containing protein.
    
 
 0.906
jhhlp_003462
Uncharacterized protein.
    
 
 0.901
jhhlp_004097
Uncharacterized protein.
    
 
 0.900
jhhlp_004310
S10_plectin domain-containing protein.
    
 
 0.897
Your Current Organism:
Lomentospora prolificans
NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.