Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEC30765.1 | SEC35428.1 | SAMN05445871_1996 | SAMN05445871_2073 | Threonine dehydratase. | Homoserine dehydrogenase. | 0.683 |
SEC30765.1 | SEE39904.1 | SAMN05445871_1996 | SAMN05445871_5370 | Threonine dehydratase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.566 |
SEC30765.1 | SEE74131.1 | SAMN05445871_1996 | SAMN05445871_5982 | Threonine dehydratase. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.404 |
SEC30765.1 | SEE83221.1 | SAMN05445871_1996 | SAMN05445871_6336 | Threonine dehydratase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.564 |
SEC30765.1 | ilvA | SAMN05445871_1996 | SAMN05445871_0782 | Threonine dehydratase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.920 |
SEC30765.1 | ilvD | SAMN05445871_1996 | SAMN05445871_2879 | Threonine dehydratase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.614 |
SEC30765.1 | ilvD-2 | SAMN05445871_1996 | SAMN05445871_5306 | Threonine dehydratase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.628 |
SEC30765.1 | ilvE | SAMN05445871_1996 | SAMN05445871_0865 | Threonine dehydratase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.940 |
SEC35428.1 | SEC30765.1 | SAMN05445871_2073 | SAMN05445871_1996 | Homoserine dehydrogenase. | Threonine dehydratase. | 0.683 |
SEC35428.1 | ilvA | SAMN05445871_2073 | SAMN05445871_0782 | Homoserine dehydrogenase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.683 |
SEC35428.1 | ilvE | SAMN05445871_2073 | SAMN05445871_0865 | Homoserine dehydrogenase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.951 |
SEE39904.1 | SEC30765.1 | SAMN05445871_5370 | SAMN05445871_1996 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Threonine dehydratase. | 0.566 |
SEE39904.1 | ilvA | SAMN05445871_5370 | SAMN05445871_0782 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.503 |
SEE39904.1 | ilvD-2 | SAMN05445871_5370 | SAMN05445871_5306 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.513 |
SEE39904.1 | ilvE | SAMN05445871_5370 | SAMN05445871_0865 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.939 |
SEE39904.1 | leuA | SAMN05445871_5370 | SAMN05445871_2689 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.902 |
SEE39904.1 | leuA-2 | SAMN05445871_5370 | SAMN05445871_3239 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.881 |
SEE74131.1 | SEC30765.1 | SAMN05445871_5982 | SAMN05445871_1996 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Threonine dehydratase. | 0.404 |
SEE74131.1 | ilvA | SAMN05445871_5982 | SAMN05445871_0782 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.404 |
SEE74131.1 | ilvE | SAMN05445871_5982 | SAMN05445871_0865 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.936 |
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