STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB68912.1Two-component system, OmpR family, sensor kinase. (433 aa)    
Predicted Functional Partners:
SEE73644.1
PAS domain S-box-containing protein.
   
 0.985
SEB68862.1
Two component transcriptional regulator, winged helix family; Manually curated.
 0.975
SEC03508.1
Dihydrolipoamide dehydrogenase.
    
 0.966
SEE82106.1
Two component transcriptional regulator, winged helix family.
 0.921
SEE63013.1
Signal transduction histidine kinase.
 
0.919
SEE29627.1
PAS/PAC sensor signal transduction histidine kinase.
 
0.904
SEB46361.1
Two component transcriptional regulator, winged helix family.
 0.902
SEB67435.1
Two component transcriptional regulator, winged helix family.
 0.902
SED88241.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.900
SEC74754.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 
 0.899
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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