STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC16906.12-dehydro-3-deoxygluconokinase. (326 aa)    
Predicted Functional Partners:
SEC16841.1
Sugar phosphate isomerase/epimerase.
 
 0.971
SEC93240.1
2-keto-3-deoxy-phosphogluconate aldolase.
 
 
 0.969
SEB60585.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.941
SEC31738.1
2-keto-3-deoxygluconate kinase.
  
  
 
0.915
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
    
 0.908
SED90335.1
Altronate hydrolase.
 
  
 0.878
SEC17069.1
Transcriptional regulator, LacI family.
 
 
 0.856
SEC94885.1
2-keto-3-deoxy-phosphogalactonate aldolase.
 
 
 0.855
SEC64893.1
5-deoxyglucuronate isomerase.
 
 
 0.850
SEE83152.1
L-seryl-tRNA(Sec) selenium transferase.
  
 
  0.840
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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