STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC18841.1N-acetylglucosaminyl deacetylase, LmbE family. (229 aa)    
Predicted Functional Partners:
SEC88640.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.750
SEE63696.1
Outer membrane protein.
  
     0.749
SEC16555.1
Beta subunit of N-acylethanolamine-hydrolyzing acid amidase.
  
     0.705
SEC47594.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
     0.704
SED70869.1
Hypothetical protein.
  
     0.702
SED62872.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
  
     0.684
SEC31085.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.675
SED62828.1
Hemolysin activation/secretion protein.
  
     0.673
SEC21033.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.670
SED70986.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
     0.666
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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