STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED71554.1Flavoprotein. (198 aa)    
Predicted Functional Partners:
SED71594.1
Dihydropteroate synthase-related protein.
 
     0.957
SED71293.1
alpha-L-glutamate ligase, RimK family; Belongs to the RimK family.
 
  
  0.907
SED72017.1
Hypothetical protein.
 
     0.817
SED72055.1
Uncharacterized protein, UPF0264 family.
 
     0.817
SED72100.1
Amino acid kinase family protein.
 
     0.817
SED71120.1
beta-RFAP synthase.
 
    0.802
SED72263.1
Formylmethanofuran dehydrogenase, subunit B.
 
     0.798
SED72305.1
Formylmethanofuran dehydrogenase, subunit A.
 
     0.796
SED71209.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
 
     0.793
SED72458.1
Formylmethanofuran dehydrogenase, subunit C.
 
     0.790
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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