Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEB84080.1 | SED96734.1 | SAMN05445871_1173 | SAMN05445871_4362 | Chorismate mutase. | Amino acid/polyamine/organocation transporter, APC superfamily. | 0.514 |
SEB84080.1 | SEE74609.1 | SAMN05445871_1173 | SAMN05445871_6001 | Chorismate mutase. | Glutamate or tyrosine decarboxylase. | 0.723 |
SEB84080.1 | nadE | SAMN05445871_1173 | SAMN05445871_2832 | Chorismate mutase. | NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.785 |
SED86338.1 | SED96734.1 | SAMN05445871_4114 | SAMN05445871_4362 | Trehalose synthase. | Amino acid/polyamine/organocation transporter, APC superfamily. | 0.888 |
SED86338.1 | glgE | SAMN05445871_4114 | SAMN05445871_4113 | Trehalose synthase. | Starch synthase (maltosyl-transferring); Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.998 |
SED96662.1 | SED96734.1 | SAMN05445871_4361 | SAMN05445871_4362 | Lysine decarboxylase/arginine decarboxylase. | Amino acid/polyamine/organocation transporter, APC superfamily. | 0.597 |
SED96662.1 | SED96779.1 | SAMN05445871_4361 | SAMN05445871_4363 | Lysine decarboxylase/arginine decarboxylase. | Ornithine decarboxylase. | 0.759 |
SED96662.1 | SED96850.1 | SAMN05445871_4361 | SAMN05445871_4365 | Lysine decarboxylase/arginine decarboxylase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.452 |
SED96662.1 | SED96899.1 | SAMN05445871_4361 | SAMN05445871_4366 | Lysine decarboxylase/arginine decarboxylase. | Carbamate kinase; Belongs to the carbamate kinase family. | 0.446 |
SED96662.1 | arcA | SAMN05445871_4361 | SAMN05445871_4364 | Lysine decarboxylase/arginine decarboxylase. | Arginine deiminase. | 0.732 |
SED96734.1 | SEB84080.1 | SAMN05445871_4362 | SAMN05445871_1173 | Amino acid/polyamine/organocation transporter, APC superfamily. | Chorismate mutase. | 0.514 |
SED96734.1 | SED86338.1 | SAMN05445871_4362 | SAMN05445871_4114 | Amino acid/polyamine/organocation transporter, APC superfamily. | Trehalose synthase. | 0.888 |
SED96734.1 | SED96662.1 | SAMN05445871_4362 | SAMN05445871_4361 | Amino acid/polyamine/organocation transporter, APC superfamily. | Lysine decarboxylase/arginine decarboxylase. | 0.597 |
SED96734.1 | SED96779.1 | SAMN05445871_4362 | SAMN05445871_4363 | Amino acid/polyamine/organocation transporter, APC superfamily. | Ornithine decarboxylase. | 0.705 |
SED96734.1 | SED96850.1 | SAMN05445871_4362 | SAMN05445871_4365 | Amino acid/polyamine/organocation transporter, APC superfamily. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.875 |
SED96734.1 | SED96899.1 | SAMN05445871_4362 | SAMN05445871_4366 | Amino acid/polyamine/organocation transporter, APC superfamily. | Carbamate kinase; Belongs to the carbamate kinase family. | 0.908 |
SED96734.1 | SEE74609.1 | SAMN05445871_4362 | SAMN05445871_6001 | Amino acid/polyamine/organocation transporter, APC superfamily. | Glutamate or tyrosine decarboxylase. | 0.482 |
SED96734.1 | arcA | SAMN05445871_4362 | SAMN05445871_4364 | Amino acid/polyamine/organocation transporter, APC superfamily. | Arginine deiminase. | 0.938 |
SED96734.1 | glgE | SAMN05445871_4362 | SAMN05445871_4113 | Amino acid/polyamine/organocation transporter, APC superfamily. | Starch synthase (maltosyl-transferring); Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.888 |
SED96734.1 | nadE | SAMN05445871_4362 | SAMN05445871_2832 | Amino acid/polyamine/organocation transporter, APC superfamily. | NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.580 |
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