STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED98891.1Hypothetical protein. (875 aa)    
Predicted Functional Partners:
SED98854.1
Phospholipid-binding lipoprotein MlaA.
 
     0.814
SED99149.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.805
SED98707.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
     0.799
SED99279.1
Hopene-associated glycosyltransferase HpnB.
 
   
 0.795
SED98744.1
Hopanoid-associated phosphorylase.
 
     0.792
SEE34225.1
Putative membrane protein.
 
     0.777
SEE80491.1
Putative membrane protein.
 
     0.776
SEC49666.1
Putative membrane protein.
 
     0.775
SEE07261.1
Hypothetical protein.
 
     0.766
SED99369.1
Dihydroflavonol-4-reductase.
  
   
 0.760
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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