STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE09544.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
SEE09589.1
Hypothetical protein.
       0.773
SEC88640.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.727
SED70869.1
Hypothetical protein.
  
     0.692
SED70642.1
mxaK protein.
  
     0.661
SED70986.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
     0.617
SEE82652.1
OmpA family protein.
  
     0.563
SEC67117.1
Probable phosphoglycerate mutase.
  
     0.561
SEC88993.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.558
SED70565.1
mxaA protein.
  
     0.542
SEE82557.1
Type VI secretion system protein VasJ.
  
     0.534
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.