Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEB49687.1 | SEB49724.1 | SAMN05445871_0349 | SAMN05445871_0350 | CheA signal transduction histidine kinase. | CheW protein. | 0.999 |
SEB49687.1 | SEB49801.1 | SAMN05445871_0349 | SAMN05445871_0353 | CheA signal transduction histidine kinase. | MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.976 |
SEB49687.1 | SED63065.1 | SAMN05445871_0349 | SAMN05445871_3569 | CheA signal transduction histidine kinase. | MCP methyltransferase, CheR-type. | 0.965 |
SEB49687.1 | SED63170.1 | SAMN05445871_0349 | SAMN05445871_3570 | CheA signal transduction histidine kinase. | Purine-binding chemotaxis protein CheW. | 0.997 |
SEB49687.1 | SED63272.1 | SAMN05445871_0349 | SAMN05445871_3572 | CheA signal transduction histidine kinase. | Two-component system, chemotaxis family, sensor kinase CheA. | 0.927 |
SEB49687.1 | SED95587.1 | SAMN05445871_0349 | SAMN05445871_4335 | CheA signal transduction histidine kinase. | Hypothetical protein/two-component system, chemotaxis family, sensor kinase CheA. | 0.926 |
SEB49687.1 | SEE62415.1 | SAMN05445871_0349 | SAMN05445871_5522 | CheA signal transduction histidine kinase. | Methyl-accepting chemotaxis sensory transducer with TarH sensor. | 0.980 |
SEB49687.1 | cheB | SAMN05445871_0349 | SAMN05445871_0355 | CheA signal transduction histidine kinase. | Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.998 |
SEB49687.1 | cheB-2 | SAMN05445871_0349 | SAMN05445871_3573 | CheA signal transduction histidine kinase. | Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.998 |
SEB49687.1 | cheD | SAMN05445871_0349 | SAMN05445871_0354 | CheA signal transduction histidine kinase. | CheD, stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.980 |
SEB49724.1 | SEB49687.1 | SAMN05445871_0350 | SAMN05445871_0349 | CheW protein. | CheA signal transduction histidine kinase. | 0.999 |
SEB49724.1 | SEB49801.1 | SAMN05445871_0350 | SAMN05445871_0353 | CheW protein. | MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.967 |
SEB49724.1 | SED63065.1 | SAMN05445871_0350 | SAMN05445871_3569 | CheW protein. | MCP methyltransferase, CheR-type. | 0.936 |
SEB49724.1 | SED63272.1 | SAMN05445871_0350 | SAMN05445871_3572 | CheW protein. | Two-component system, chemotaxis family, sensor kinase CheA. | 0.999 |
SEB49724.1 | SED95587.1 | SAMN05445871_0350 | SAMN05445871_4335 | CheW protein. | Hypothetical protein/two-component system, chemotaxis family, sensor kinase CheA. | 0.998 |
SEB49724.1 | SEE62415.1 | SAMN05445871_0350 | SAMN05445871_5522 | CheW protein. | Methyl-accepting chemotaxis sensory transducer with TarH sensor. | 0.968 |
SEB49724.1 | cheB | SAMN05445871_0350 | SAMN05445871_0355 | CheW protein. | Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.988 |
SEB49724.1 | cheB-2 | SAMN05445871_0350 | SAMN05445871_3573 | CheW protein. | Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.982 |
SEB49724.1 | cheD | SAMN05445871_0350 | SAMN05445871_0354 | CheW protein. | CheD, stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.952 |
SEB49801.1 | SEB49687.1 | SAMN05445871_0353 | SAMN05445871_0349 | MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | CheA signal transduction histidine kinase. | 0.976 |
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