STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE62728.1Pilus biogenesis CpaD protein (pilus_cpaD). (124 aa)    
Predicted Functional Partners:
SEE62754.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
     
 0.815
SEE62673.1
Pilus assembly protein CpaF.
     
 0.730
SEE62614.1
Type II secretion system protein F (GspF).
       0.723
SEE62645.1
Flp pilus assembly protein TadB.
       0.723
SEE62699.1
Pilus assembly protein CpaE.
       0.723
SEE62528.1
TadE-like protein.
       0.674
SEE62559.1
Flp pilus assembly protein TadG.
       0.674
SEE62586.1
Tetratricopeptide repeat-containing protein.
       0.666
SEE62776.1
Pilus assembly protein CpaB.
       0.660
SEE62816.1
Prepilin peptidase CpaA; Belongs to the peptidase A24 family.
       0.642
Your Current Organism:
Paraburkholderia caballeronis
NCBI taxonomy Id: 416943
Other names: Burkholderia caballeronis, Burkholderia caballeronis Martinez et al. 2014, Burkholderia sp. TNe-834, Burkholderia sp. TNe-835, Burkholderia sp. TNe-841, Burkholderia sp. TNe-8411, Burkholderia sp. TNe-8641, Burkholderia sp. TNe-8683, Burkholderia sp. TNe-869, Burkholderia sp. TNe-878, CIP 110324, LMG 26416, LMG:26416, P. caballeronis, Paraburkholderia caballeronis (Martinez et al. 2014) Sawana et al. 2017, strain TNe-841
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