SDC02272.1 protein (Burkholderia sp. TNe862)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDC02272.1

Osmotically inducible lipoprotein OsmB. (73 aa)

Predicted Functional Partners:

tolB

0.949

SDC59204.1

0.874

SDB96716.1

0.848

SDD81511.1

0.812

SDC34918.1

0.810

SDD16432.1

0.801

SDD76180.1

0.799

SDC02084.1

0.779

SDD16495.1

0.771

SDC24955.1

0.770

Your Current Organism:

Burkholderia sp. TNe862

NCBI taxonomy Id: 416944
Other names: B. sp. TNe-862, Burkholderia sp. TNe-862

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDB96716.1	SDC02272.1	SAMN05421548_10386	SAMN05421548_103284	Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family.	Osmotically inducible lipoprotein OsmB.	0.848
SDC02084.1	SDC02272.1	SAMN05421548_103277	SAMN05421548_103284	Bacterioferritin.	Osmotically inducible lipoprotein OsmB.	0.779
SDC02084.1	SDC24955.1	SAMN05421548_103277	SAMN05421548_10568	Bacterioferritin.	Hypothetical protein.	0.786
SDC02272.1	SDB96716.1	SAMN05421548_103284	SAMN05421548_10386	Osmotically inducible lipoprotein OsmB.	Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family.	0.848
SDC02272.1	SDC02084.1	SAMN05421548_103284	SAMN05421548_103277	Osmotically inducible lipoprotein OsmB.	Bacterioferritin.	0.779
SDC02272.1	SDC24955.1	SAMN05421548_103284	SAMN05421548_10568	Osmotically inducible lipoprotein OsmB.	Hypothetical protein.	0.770
SDC02272.1	SDC34918.1	SAMN05421548_103284	SAMN05421548_1062	Osmotically inducible lipoprotein OsmB.	Type VI secretion system protein ImpK.	0.810
SDC02272.1	SDC59204.1	SAMN05421548_103284	SAMN05421548_10898	Osmotically inducible lipoprotein OsmB.	Hypothetical protein.	0.874
SDC02272.1	SDD16432.1	SAMN05421548_103284	SAMN05421548_11581	Osmotically inducible lipoprotein OsmB.	Type VI secretion system protein ImpK.	0.801
SDC02272.1	SDD16495.1	SAMN05421548_103284	SAMN05421548_11583	Osmotically inducible lipoprotein OsmB.	Type VI secretion system protein ImpK.	0.771
SDC02272.1	SDD76180.1	SAMN05421548_103284	SAMN05421548_1252	Osmotically inducible lipoprotein OsmB.	Type VI secretion system protein ImpK.	0.799
SDC02272.1	SDD81511.1	SAMN05421548_103284	SAMN05421548_12618	Osmotically inducible lipoprotein OsmB.	Type VI secretion system protein ImpK.	0.812
SDC02272.1	tolB	SAMN05421548_103284	SAMN05421548_105190	Osmotically inducible lipoprotein OsmB.	TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.949
SDC24955.1	SDC02084.1	SAMN05421548_10568	SAMN05421548_103277	Hypothetical protein.	Bacterioferritin.	0.786
SDC24955.1	SDC02272.1	SAMN05421548_10568	SAMN05421548_103284	Hypothetical protein.	Osmotically inducible lipoprotein OsmB.	0.770
SDC34918.1	SDC02272.1	SAMN05421548_1062	SAMN05421548_103284	Type VI secretion system protein ImpK.	Osmotically inducible lipoprotein OsmB.	0.810
SDC34918.1	SDD16432.1	SAMN05421548_1062	SAMN05421548_11581	Type VI secretion system protein ImpK.	Type VI secretion system protein ImpK.	0.654
SDC34918.1	SDD16495.1	SAMN05421548_1062	SAMN05421548_11583	Type VI secretion system protein ImpK.	Type VI secretion system protein ImpK.	0.727
SDC34918.1	SDD76180.1	SAMN05421548_1062	SAMN05421548_1252	Type VI secretion system protein ImpK.	Type VI secretion system protein ImpK.	0.643
SDC34918.1	SDD81511.1	SAMN05421548_1062	SAMN05421548_12618	Type VI secretion system protein ImpK.	Type VI secretion system protein ImpK.	0.735