STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC96213.1HlyD family secretion protein. (341 aa)    
Predicted Functional Partners:
SDC96289.1
ABC-2 type transport system permease protein.
 
  
 0.959
SDC96238.1
Ribosome-dependent ATPase.
 
  
 0.955
SDE17038.1
ATP-binding cassette, subfamily B.
  
 0.936
SDC96341.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.894
SDD30773.1
ABC-2 type transport system permease protein.
 
  
 0.827
SDD30745.1
Ribosome-dependent ATPase.
 
  
 0.817
SDC95903.1
ABC-2 type transport system permease protein.
 
  
 0.775
SDC95872.1
ABC-2 type transport system permease protein.
 
  
 0.764
SDE19832.1
ABC-2 type transport system permease protein.
 
  
 0.700
SDC95931.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.689
Your Current Organism:
Burkholderia sp. TNe862
NCBI taxonomy Id: 416944
Other names: B. sp. TNe-862, Burkholderia sp. TNe-862
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.