STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD92179.1Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. (747 aa)    
Predicted Functional Partners:
SDD91171.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 
 0.980
SDC81008.1
Aconitase; Belongs to the aconitase/IPM isomerase family.
 
 
 0.900
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.881
mdh-2
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.881
SDD86662.1
Glutamate synthase (NADH) large subunit.
     
 0.847
SDC00681.1
Dihydrolipoamide dehydrogenase.
     
 0.839
SDB86859.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.812
SDD20882.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.812
SDE19975.1
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.805
SDC39607.1
2-oxoglutarate dehydrogenase E1 component.
   
 
 0.800
Your Current Organism:
Burkholderia sp. TNe862
NCBI taxonomy Id: 416944
Other names: B. sp. TNe-862, Burkholderia sp. TNe-862
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