STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OUC80624.1Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)    
Predicted Functional Partners:
OUC80625.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.989
OUC78372.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.934
OUC79088.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.923
OUC79941.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.918
OUC79828.1
GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.910
OUC78215.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.907
OUC80351.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.903
OUC78896.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.896
OUC78305.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
OUC78935.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.864
Your Current Organism:
Gordonia lacunae
NCBI taxonomy Id: 417102
Other names: DSM 45085, G. lacunae, Gordonia lacunae le Roes et al. 2009, JCM 14873, NRRL B-24551, strain BS2
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