STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OUC79868.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
OUC78197.1
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
OUC80984.1
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.511
OUC77167.1
GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
       0.464
OUC80630.1
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
OUC80706.1
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
Your Current Organism:
Gordonia lacunae
NCBI taxonomy Id: 417102
Other names: DSM 45085, G. lacunae, Gordonia lacunae le Roes et al. 2009, JCM 14873, NRRL B-24551, strain BS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.