STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OUC78840.1TRAP transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)    
Predicted Functional Partners:
OUC78839.1
Alpha-ketoglutarate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.814
OUC78838.1
Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.745
OUC77038.1
Tricarboxylic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.683
OUC77035.1
Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.682
OUC78935.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.654
OUC78841.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
OUC78305.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.491
OUC79921.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.454
OUC75915.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.454
OUC75743.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.454
Your Current Organism:
Gordonia lacunae
NCBI taxonomy Id: 417102
Other names: DSM 45085, G. lacunae, Gordonia lacunae le Roes et al. 2009, JCM 14873, NRRL B-24551, strain BS2
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.