STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OUC78408.1Peptidase S16; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
OUC78407.1
Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.868
OUC76762.1
Adenylyltransferase/sulfurtransferase MoeZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.865
OUC76778.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.841
OUC78266.1
DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.811
sbcD
Exonuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.806
OUC78759.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.750
OUC76966.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.739
OUC79068.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.708
OUC78137.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.704
OUC79993.1
Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
    
  0.700
Your Current Organism:
Gordonia lacunae
NCBI taxonomy Id: 417102
Other names: DSM 45085, G. lacunae, Gordonia lacunae le Roes et al. 2009, JCM 14873, NRRL B-24551, strain BS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.