STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OUC75498.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
OUC75499.1
IS30 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.823
CA982_25580
IS30 family transposase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.774
OUC77240.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.684
OUC75837.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.684
OUC75595.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.684
OUC75594.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.684
OUC75477.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.684
OUC79328.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.603
OUC76237.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.535
OUC75716.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.535
Your Current Organism:
Gordonia lacunae
NCBI taxonomy Id: 417102
Other names: DSM 45085, G. lacunae, Gordonia lacunae le Roes et al. 2009, JCM 14873, NRRL B-24551, strain BS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.