SDJ57840.1 protein (Streptomyces indicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDJ57840.1

Iron-containing redox enzyme. (338 aa)

Predicted Functional Partners:

SDJ57798.1

0.948

SDJ57817.1

0.917

SDL36930.1

0.777

SDL36956.1

0.684

SDJ57879.1

0.596

SDJ57853.1

0.542

SDJ57898.1

0.488

SDL30927.1

0.469

ribBA

0.467

SDK08674.1

0.429

Your Current Organism:

Streptomyces indicus

NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDJ57798.1	SDJ57817.1	SAMN05421806_1011093	SAMN05421806_1011094	Iron-binding zinc finger CDGSH type.	Release factor glutamine methyltransferase.	0.945
SDJ57798.1	SDJ57840.1	SAMN05421806_1011093	SAMN05421806_1011095	Iron-binding zinc finger CDGSH type.	Iron-containing redox enzyme.	0.948
SDJ57798.1	SDJ57853.1	SAMN05421806_1011093	SAMN05421806_1011096	Iron-binding zinc finger CDGSH type.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.542
SDJ57798.1	SDJ57879.1	SAMN05421806_1011093	SAMN05421806_1011097	Iron-binding zinc finger CDGSH type.	Polyketide cyclase / dehydrase and lipid transport.	0.578
SDJ57798.1	SDJ57898.1	SAMN05421806_1011093	SAMN05421806_1011098	Iron-binding zinc finger CDGSH type.	Phytoene dehydrogenase-related protein.	0.469
SDJ57798.1	SDL36956.1	SAMN05421806_1011093	SAMN05421806_13110	Iron-binding zinc finger CDGSH type.	Release factor glutamine methyltransferase.	0.776
SDJ57817.1	SDJ57798.1	SAMN05421806_1011094	SAMN05421806_1011093	Release factor glutamine methyltransferase.	Iron-binding zinc finger CDGSH type.	0.945
SDJ57817.1	SDJ57840.1	SAMN05421806_1011094	SAMN05421806_1011095	Release factor glutamine methyltransferase.	Iron-containing redox enzyme.	0.917
SDJ57817.1	SDJ57853.1	SAMN05421806_1011094	SAMN05421806_1011096	Release factor glutamine methyltransferase.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.544
SDJ57817.1	SDJ57879.1	SAMN05421806_1011094	SAMN05421806_1011097	Release factor glutamine methyltransferase.	Polyketide cyclase / dehydrase and lipid transport.	0.478
SDJ57817.1	SDJ57898.1	SAMN05421806_1011094	SAMN05421806_1011098	Release factor glutamine methyltransferase.	Phytoene dehydrogenase-related protein.	0.543
SDJ57817.1	SDL36930.1	SAMN05421806_1011094	SAMN05421806_1319	Release factor glutamine methyltransferase.	Iron-binding zinc finger CDGSH type.	0.767
SDJ57840.1	SDJ57798.1	SAMN05421806_1011095	SAMN05421806_1011093	Iron-containing redox enzyme.	Iron-binding zinc finger CDGSH type.	0.948
SDJ57840.1	SDJ57817.1	SAMN05421806_1011095	SAMN05421806_1011094	Iron-containing redox enzyme.	Release factor glutamine methyltransferase.	0.917
SDJ57840.1	SDJ57853.1	SAMN05421806_1011095	SAMN05421806_1011096	Iron-containing redox enzyme.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.542
SDJ57840.1	SDJ57879.1	SAMN05421806_1011095	SAMN05421806_1011097	Iron-containing redox enzyme.	Polyketide cyclase / dehydrase and lipid transport.	0.596
SDJ57840.1	SDJ57898.1	SAMN05421806_1011095	SAMN05421806_1011098	Iron-containing redox enzyme.	Phytoene dehydrogenase-related protein.	0.488
SDJ57840.1	SDK08674.1	SAMN05421806_1011095	SAMN05421806_104372	Iron-containing redox enzyme.	Dienelactone hydrolase family protein.	0.429
SDJ57840.1	SDL30927.1	SAMN05421806_1011095	SAMN05421806_12649	Iron-containing redox enzyme.	Hypothetical protein.	0.469
SDJ57840.1	SDL36930.1	SAMN05421806_1011095	SAMN05421806_1319	Iron-containing redox enzyme.	Iron-binding zinc finger CDGSH type.	0.777