STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ47771.1ABC-2 type transport system ATP-binding protein. (269 aa)    
Predicted Functional Partners:
SDJ47791.1
ABC-2 family transporter protein.
 
     0.939
SDJ47827.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.805
SDJ47811.1
Signal transduction histidine kinase.
  
    0.799
SDJ76696.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
     0.668
SDL38873.1
ABC-2 family transporter protein.
  
     0.667
SDK15226.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
     0.614
SDJ47850.1
TIGR03083 family protein.
       0.605
SDJ62431.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
  0.599
SDL11393.1
Hypothetical protein.
  
     0.596
SDJ52754.1
ABC-type branched-chain amino acid transport system, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
    
 
0.589
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.