Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ72497.1 | SDJ72639.1 | SAMN05421806_102198 | SAMN05421806_102205 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Branched-chain amino acid aminotransferase. | 0.983 |
SDJ72497.1 | SDK22860.1 | SAMN05421806_102198 | SAMN05421806_105391 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.947 |
SDJ72497.1 | ilvD | SAMN05421806_102198 | SAMN05421806_1366 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.970 |
SDJ72497.1 | leuA | SAMN05421806_102198 | SAMN05421806_109125 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.906 |
SDJ72639.1 | SDJ72497.1 | SAMN05421806_102205 | SAMN05421806_102198 | Branched-chain amino acid aminotransferase. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.983 |
SDJ72639.1 | SDJ77363.1 | SAMN05421806_102205 | SAMN05421806_102459 | Branched-chain amino acid aminotransferase. | Homoserine dehydrogenase. | 0.949 |
SDJ72639.1 | SDK22860.1 | SAMN05421806_102205 | SAMN05421806_105391 | Branched-chain amino acid aminotransferase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.984 |
SDJ72639.1 | SDK40098.1 | SAMN05421806_102205 | SAMN05421806_107115 | Branched-chain amino acid aminotransferase. | Threonine dehydratase. | 0.955 |
SDJ72639.1 | SDK40178.1 | SAMN05421806_102205 | SAMN05421806_107119 | Branched-chain amino acid aminotransferase. | Cystathionine gamma-synthase. | 0.937 |
SDJ72639.1 | SDK81138.1 | SAMN05421806_102205 | SAMN05421806_112129 | Branched-chain amino acid aminotransferase. | Cystathionine gamma-lyase. | 0.937 |
SDJ72639.1 | ilvD | SAMN05421806_102205 | SAMN05421806_1366 | Branched-chain amino acid aminotransferase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.981 |
SDJ72639.1 | leuA | SAMN05421806_102205 | SAMN05421806_109125 | Branched-chain amino acid aminotransferase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.984 |
SDJ72639.1 | panB | SAMN05421806_102205 | SAMN05421806_104130 | Branched-chain amino acid aminotransferase. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.921 |
SDJ72639.1 | thrB | SAMN05421806_102205 | SAMN05421806_102457 | Branched-chain amino acid aminotransferase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.922 |
SDJ77363.1 | SDJ72639.1 | SAMN05421806_102459 | SAMN05421806_102205 | Homoserine dehydrogenase. | Branched-chain amino acid aminotransferase. | 0.949 |
SDJ77363.1 | SDK22860.1 | SAMN05421806_102459 | SAMN05421806_105391 | Homoserine dehydrogenase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.513 |
SDJ77363.1 | SDK40098.1 | SAMN05421806_102459 | SAMN05421806_107115 | Homoserine dehydrogenase. | Threonine dehydratase. | 0.764 |
SDJ77363.1 | SDK40178.1 | SAMN05421806_102459 | SAMN05421806_107119 | Homoserine dehydrogenase. | Cystathionine gamma-synthase. | 0.939 |
SDJ77363.1 | SDK81138.1 | SAMN05421806_102459 | SAMN05421806_112129 | Homoserine dehydrogenase. | Cystathionine gamma-lyase. | 0.939 |
SDJ77363.1 | ilvD | SAMN05421806_102459 | SAMN05421806_1366 | Homoserine dehydrogenase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.531 |
page 1 of 4