STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ79043.1HlyD family secretion protein. (412 aa)    
Predicted Functional Partners:
SDJ79088.1
Putative ABC transport system permease protein.
 
 
 0.993
SDK05596.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.974
SDJ79020.1
Hypothetical protein.
 
     0.954
SDJ79063.1
Putative ABC transport system ATP-binding protein.
 
 
 0.944
SDJ38778.1
Putative ABC transport system permease protein.
 
 
 0.936
SDJ53024.1
Putative ABC transport system permease protein.
 
 
 0.891
SDK31654.1
Putative ABC transport system permease protein.
 
 
 0.816
SDJ59147.1
Putative ABC transport system permease protein.
  
 
 0.799
SDJ37300.1
Putative ABC transport system permease protein.
  
 
 0.799
SDK30610.1
Putative ABC transport system permease protein.
  
 
 0.775
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.