STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ88931.1ABC-2 type transport system permease protein. (280 aa)    
Predicted Functional Partners:
SDJ88902.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.966
SDJ88948.1
Signal transduction histidine kinase.
 
    0.829
SDJ88971.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.800
SDJ88887.1
Uncharacterized membrane protein.
       0.775
SDL23542.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.585
SDK52239.1
ABC-2 type transport system permease protein.
 
  
  0.572
SDK02267.1
ABC-2 type transport system permease protein.
  
  
  0.551
SDK42251.1
Hypothetical protein.
  
    0.496
SDK40061.1
ABC transporter efflux protein, DrrB family.
  
  
  0.492
SDK43155.1
ABC transporter efflux protein, DrrB family.
  
  
  0.480
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.