STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ86070.1Hypothetical protein. (501 aa)    
Predicted Functional Partners:
SDJ86040.1
Hypothetical protein.
 
     0.953
SDJ86028.1
Hypothetical protein.
 
     0.941
SDJ86083.1
DNA-binding transcriptional regulator, GntR family.
       0.748
SDK69516.1
Hypothetical protein.
  
     0.695
SDJ52149.1
Pyridoxamine 5'-phosphate oxidase.
  
     0.686
SDJ86111.1
Predicted arabinose efflux permease, MFS family.
       0.682
SDJ86129.1
Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family.
       0.682
SDK08270.1
ABC-2 type transport system permease protein.
  
     0.668
SDK87514.1
Hypothetical protein.
  
     0.654
SDL10312.1
Hypothetical protein.
 
     0.652
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.