Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ60129.1 | SDK27664.1 | SAMN05421806_1011210 | SAMN05421806_1068 | DNA-binding transcriptional regulator, MarR family. | HD domain-containing protein. | 0.479 |
SDK09233.1 | SDK21332.1 | SAMN05421806_104397 | SAMN05421806_105321 | Glutamate synthase (NADH) large subunit. | Nucleoside-diphosphate-sugar epimerase. | 0.700 |
SDK09233.1 | SDK27664.1 | SAMN05421806_104397 | SAMN05421806_1068 | Glutamate synthase (NADH) large subunit. | HD domain-containing protein. | 0.430 |
SDK09233.1 | SDK81786.1 | SAMN05421806_104397 | SAMN05421806_112157 | Glutamate synthase (NADH) large subunit. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.491 |
SDK09233.1 | ribBA | SAMN05421806_104397 | SAMN05421806_10369 | Glutamate synthase (NADH) large subunit. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.479 |
SDK21332.1 | SDK09233.1 | SAMN05421806_105321 | SAMN05421806_104397 | Nucleoside-diphosphate-sugar epimerase. | Glutamate synthase (NADH) large subunit. | 0.700 |
SDK21332.1 | SDK27664.1 | SAMN05421806_105321 | SAMN05421806_1068 | Nucleoside-diphosphate-sugar epimerase. | HD domain-containing protein. | 0.505 |
SDK27642.1 | SDK27664.1 | SAMN05421806_1067 | SAMN05421806_1068 | Hypothetical protein. | HD domain-containing protein. | 0.713 |
SDK27642.1 | SDK27685.1 | SAMN05421806_1067 | SAMN05421806_1069 | Hypothetical protein. | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. | 0.437 |
SDK27664.1 | SDJ60129.1 | SAMN05421806_1068 | SAMN05421806_1011210 | HD domain-containing protein. | DNA-binding transcriptional regulator, MarR family. | 0.479 |
SDK27664.1 | SDK09233.1 | SAMN05421806_1068 | SAMN05421806_104397 | HD domain-containing protein. | Glutamate synthase (NADH) large subunit. | 0.430 |
SDK27664.1 | SDK21332.1 | SAMN05421806_1068 | SAMN05421806_105321 | HD domain-containing protein. | Nucleoside-diphosphate-sugar epimerase. | 0.505 |
SDK27664.1 | SDK27642.1 | SAMN05421806_1068 | SAMN05421806_1067 | HD domain-containing protein. | Hypothetical protein. | 0.713 |
SDK27664.1 | SDK27685.1 | SAMN05421806_1068 | SAMN05421806_1069 | HD domain-containing protein. | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. | 0.673 |
SDK27664.1 | SDK81786.1 | SAMN05421806_1068 | SAMN05421806_112157 | HD domain-containing protein. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.478 |
SDK27664.1 | folE | SAMN05421806_1068 | SAMN05421806_107238 | HD domain-containing protein. | GTP cyclohydrolase I. | 0.456 |
SDK27664.1 | pnp | SAMN05421806_1068 | SAMN05421806_1027 | HD domain-containing protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.485 |
SDK27664.1 | ribBA | SAMN05421806_1068 | SAMN05421806_10369 | HD domain-containing protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.724 |
SDK27664.1 | rnj | SAMN05421806_1068 | SAMN05421806_1441 | HD domain-containing protein. | Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.425 |
SDK27685.1 | SDK27642.1 | SAMN05421806_1069 | SAMN05421806_1067 | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. | Hypothetical protein. | 0.437 |
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