STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK43052.1DNA-binding transcriptional regulator, MerR family. (252 aa)    
Predicted Functional Partners:
SDK43076.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
       0.733
SDK59220.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
   
  0.713
SDK09233.1
Glutamate synthase (NADH) large subunit.
    
  0.674
SDJ75733.1
DNA-binding transcriptional regulator, MerR family.
  
     0.651
SDK34173.1
Signal transduction histidine kinase.
   
 
 0.641
SDK40205.1
DNA-binding transcriptional regulator, MerR family.
  
     0.613
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.606
SDK02574.1
DNA-binding transcriptional regulator, MerR family.
  
     0.576
SDJ75121.1
DNA-binding transcriptional regulator, MerR family.
  
     0.570
SDK43201.1
DNA-binding transcriptional regulator, PadR family.
       0.537
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.