STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK54565.1Sortase A. (501 aa)    
Predicted Functional Partners:
SDK54510.1
Hypothetical protein.
 
   
 0.925
SDK54588.1
LPXTG-site transpeptidase (sortase) family protein.
 
    
0.883
SDK54531.1
Para-aminobenzoate synthetase component 2.
       0.870
SDK54484.1
Sortase A.
 
    
0.823
SDK54459.1
Uncharacterized conserved protein YlxW, UPF0749 family.
       0.749
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
       0.684
SDJ92144.1
Predicted arabinose efflux permease, MFS family.
  
     0.566
SDL10290.1
Protein of unknown function.
  
     0.489
SDK82351.1
Transmembrane protein of unknown function.
  
     0.423
SDL06187.1
Predicted arabinose efflux permease, MFS family.
  
     0.418
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.