STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK55765.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
SDK55743.1
Type IV secretion system protein VirD4.
       0.811
SDK55782.1
Hypothetical protein.
       0.786
SDK55636.1
Hypothetical protein.
       0.662
SDK55673.1
Hypothetical protein.
       0.662
SDK55693.1
Hypothetical protein.
       0.662
SDK55716.1
Hypothetical protein.
       0.662
SDK55592.1
Hypothetical protein.
       0.644
SDK55606.1
Hypothetical protein.
       0.638
SDK55562.1
Hypothetical protein.
       0.631
SDK55536.1
Transglycosylase SLT domain-containing protein.
       0.506
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.