STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK68813.1Putative zinc-finger. (269 aa)    
Predicted Functional Partners:
SDK68834.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.999
SDJ46561.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.981
SDK68793.1
DNA helicase IV.
       0.783
SDK04271.1
Protein of unknown function.
 
     0.729
SDK68851.1
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
       0.720
SDK28465.1
Predicted outer membrane protein.
  
     0.630
SDK68914.1
uroporphyrinogen-III synthase.
 
     0.590
SDL40898.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family.
  
   0.582
SDK98960.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.545
SDK40140.1
Sigma-70, region 4.
  
   0.541
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.