STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06637.1Protein of unknown function. (338 aa)    
Predicted Functional Partners:
SDJ86774.1
Peptidase_C39 like family protein.
  
     0.621
SDK74559.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.567
SDJ79903.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.529
SDL23307.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.527
SDJ62002.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
  
     0.503
SDJ62264.1
Ribosomal protein S18 acetylase RimI.
  
     0.495
SDJ55773.1
Protein of unknown function.
  
     0.493
SDJ77593.1
DDE superfamily endonuclease.
  
     0.488
SDL43253.1
LysM domain-containing protein.
  
     0.473
SDK01717.1
Protein kinase domain-containing protein.
  
     0.471
Your Current Organism:
Streptomyces indicus
NCBI taxonomy Id: 417292
Other names: CGMCC 4.5727, DSM 42001, S. indicus, Streptomyces indicus Luo et al. 2011, Streptomyces sp. IH32-1, strain IH32-1
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