STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FC21_GL001202Unannotated protein; ATP-dependent DNA helicase. (1248 aa)    
Predicted Functional Partners:
FC21_GL001201
Unannotated protein; ATP-dependent DNA helicase.
 
 
 0.995
FC21_GL000186
Unannotated protein.
 
 
 0.980
recD2
Unannotated protein; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.841
FC21_GL000075
Unannotated protein.
 
     0.711
FC21_GL000581
Unannotated protein.
 
 
0.609
polA
Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.609
FC21_GL001200
Unannotated protein; Belongs to the ClpA/ClpB family.
     
 0.564
FC21_GL000816
Unannotated protein; Belongs to the UPF0297 family.
  
     0.562
FC21_GL000090
Unannotated protein.
    
 0.509
ligA
Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
  
 
 0.490
Your Current Organism:
Lactobacillus equigenerosi
NCBI taxonomy Id: 417373
Other names: DSM 18793, JCM 14505, L. equigenerosi, Lactobacillus equigenerosi Endo et al. 2008, NRIC 0697
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.