STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGTG_01707HORMA domain-containing protein. (258 aa)    
Predicted Functional Partners:
PGTG_03687
DNA polymerase.
    
 0.999
PGTG_07406
UmuC domain-containing protein.
   
 0.998
PGTG_08327
Uncharacterized protein.
    
 0.983
PGTG_04360
UmuC domain-containing protein.
   
 0.973
PGTG_07779
Uncharacterized protein.
   
 0.973
PGTG_11449
UmuC domain-containing protein.
   
 0.973
PGTG_03393
UmuC domain-containing protein.
   
 0.933
PGTG_17326
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
    
 0.917
PGTG_05454
DNA polymerase delta subunit 1.
    
 0.879
PGTG_11678
DNA polymerase.
    
 0.879
Your Current Organism:
Puccinia graminis
NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.