STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGTG_03134PseudoU_synth_2 domain-containing protein. (545 aa)    
Predicted Functional Partners:
PGTG_06748
TRUD domain-containing protein.
    
 
 0.912
PGTG_14281
tRNA modification GTPase TrmE.
  
 
 0.879
PGTG_01020
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.864
PGTG_07958
Ribosomal_L18e/L15P domain-containing protein.
  
   0.860
PGTG_02545
Large subunit ribosomal protein L26e.
   
   0.859
PGTG_13047
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.849
PGTG_17155
Large subunit ribosomal protein L13.
  
   0.847
PGTG_12248
CP-type G domain-containing protein.
   
 
 0.824
PGTG_07709
Large subunit ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.822
PGTG_14134
Uncharacterized protein.
    
 
 0.819
Your Current Organism:
Puccinia graminis
NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.