STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGTG_04233Uncharacterized protein. (449 aa)    
Predicted Functional Partners:
PGTG_06077
Uncharacterized protein.
   
 0.999
PGTG_15556
AAA domain-containing protein.
   
 0.999
PGTG_12247
Replication factor C subunit 3/5.
   
 0.994
PGTG_05828
Replication factor C subunit 4.
   
 0.972
PGTG_17326
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 0.971
PGTG_02873
Replication factor C subunit 3/5.
   
 0.970
PGTG_01318
Replication factor C subunit 2/4.
   
 0.965
PGTG_14030
DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.
   
 
 0.883
PGTG_20567
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 
 0.838
PGTG_22494
Replication factor C subunit 1.
   
 0.827
Your Current Organism:
Puccinia graminis
NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.