STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW25089.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
SDY47338.1
Cytochrome P450 / NADPH-cytochrome P450 reductase.
  
 0.962
SDX75198.1
NADH dehydrogenase subunit F.
  
 
 0.937
SDZ17694.1
NADH:ubiquinone oxidoreductase, NADH-binding subunit (chain F).
  
 
 0.917
SDZ18741.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
  
 
 0.917
SDY39887.1
Polyketide synthase 12/coronafacic acid polyketide synthase Cfa7.
  
 0.871
SDW12751.1
Acyl carrier protein.
   
 0.843
SDZ47222.1
2,4-dienoyl-CoA reductase.
  
 0.840
SDW59130.1
Acyl transferase domain-containing protein.
   
 0.832
SDY18471.1
Acyl transferase domain-containing protein.
   
 0.832
nuoD
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
 
 0.828
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
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