STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW25587.1Helix-turn-helix domain-containing protein. (287 aa)    
Predicted Functional Partners:
SDW25625.1
Protein of unknown function.
 
     0.845
SDX20842.1
Hypothetical protein.
  
     0.770
SDZ29965.1
S-adenosyl methyltransferase.
  
     0.731
SDY97185.1
S-adenosyl methyltransferase.
  
     0.730
SDX31431.1
S-adenosyl methyltransferase.
  
     0.728
SDX78257.1
Protein of unknown function.
  
     0.728
SDX03335.1
Protein of unknown function.
  
     0.719
SDZ51725.1
Protein of unknown function.
  
     0.719
SDY81917.1
S-adenosyl methyltransferase.
  
     0.717
SDW76453.1
Protein of unknown function.
  
     0.716
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.