STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW63902.1phenylacetate-CoA ligase. (433 aa)    
Predicted Functional Partners:
SDW95179.1
acyl-CoA thioesterase.
 
 
 0.925
SDW95106.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 
 0.912
SDW94993.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
  
 0.910
SDW95071.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 
 0.908
SDY38207.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 
 0.905
SDW95027.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 
 0.902
SDW94956.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
  
 0.842
SDW95221.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 
0.781
SDW95142.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
 
 
 0.771
SDZ11318.1
Amidase.
    
  0.763
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
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