STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW97171.1Transcriptional regulator, IclR family. (268 aa)    
Predicted Functional Partners:
SDX80273.1
Transcriptional regulator, IclR family.
  
     0.773
SDW42274.1
Transcriptional regulator, IclR family.
  
     0.769
SDW98004.1
Transcriptional regulator, IclR family.
  
     0.766
SDZ22006.1
Transcriptional regulator, IclR family.
  
     0.759
SDY89079.1
Transcriptional regulator, IclR family.
  
     0.751
SDZ40980.1
Transcriptional regulator, IclR family.
  
     0.746
SDW98668.1
Transcriptional regulator, IclR family.
  
     0.638
SDZ47309.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
  0.638
SDY92513.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.603
SDW25131.1
DNA-binding transcriptional regulator, IclR family.
  
     0.573
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.