STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX17237.1Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain. (155 aa)    
Predicted Functional Partners:
SDX38016.1
Branched-chain amino acid transport system ATP-binding protein.
   
  0.853
SDX38054.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
   
  0.853
SDY27627.1
Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
  0.757
SDZ17694.1
NADH:ubiquinone oxidoreductase, NADH-binding subunit (chain F).
    
  0.695
SDZ18741.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
  0.695
SDX17205.1
SagB-type dehydrogenase domain-containing protein.
  
    0.661
SDX17178.1
Hypothetical protein.
       0.532
SDX17272.1
ABC-2 type transport system ATP-binding protein.
   
 
 0.528
SDX17300.1
ABC-2 type transport system permease protein.
       0.485
SDX17349.1
Two-component system, NarL family, sensor histidine kinase DesK.
       0.485
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.