STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY30717.1Histidine kinase. (179 aa)    
Predicted Functional Partners:
SDY33029.1
PAS domain S-box-containing protein.
  
 0.709
SDZ50449.1
GAF sensor hybrid histidine kinase.
  
 0.702
SDX43456.1
Phage shock protein C (PspC) family protein.
  
  
 0.660
SDZ48614.1
Hypothetical protein.
   
    0.577
SDY47375.1
PAS domain S-box-containing protein.
    
  0.439
SDY32997.1
Two-component system, OmpR family, KDP operon response regulator KdpE/two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC/two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.424
SDY30746.1
Transcriptional regulator, XRE family with cupin sensor.
       0.413
SDY30681.1
Cysteine-rich secretory protein family protein.
       0.410
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.