STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY83576.1Protein of unknown function. (203 aa)    
Predicted Functional Partners:
SDY83600.1
tRNA G18 (ribose-2'-O)-methylase SpoU.
 
     0.870
SDX28703.1
Hypothetical protein.
  
     0.768
SDY94466.1
Hypothetical protein.
  
     0.768
SDW28356.1
Hypothetical protein.
  
     0.765
SDY76815.1
Hypothetical protein.
  
     0.765
SDY22287.1
Protein of unknown function.
  
     0.760
SDY35963.1
Hypothetical protein.
  
     0.760
SDX46577.1
Type VII secretion protein EccE.
  
     0.759
SDY35912.1
Hypothetical protein.
  
     0.759
SDW34393.1
Hypothetical protein.
  
     0.757
Your Current Organism:
Saccharopolyspora shandongensis
NCBI taxonomy Id: 418495
Other names: CGMCC 4.3530, JCM 14614, S. shandongensis, Saccharopolyspora shandongensis Zhang et al. 2008, strain 88
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.