STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMG56332.1Appr-1-p processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
OMG56333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.950
OMG56891.1
Site-specific DNA-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.754
OMG56336.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.691
OMG56892.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.606
OMG56335.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
OMG56334.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.602
OMG55275.1
Phosphoketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.501
OMG56331.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
OMG54824.1
Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.471
OMG54885.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.471
Your Current Organism:
Azonexus hydrophilus
NCBI taxonomy Id: 418702
Other names: A. hydrophilus, Azonexus hydrophilus Chou et al. 2008, BCRC 17657, DSM 23864, LMG 24005, LMG:24005, beta proteobacterium IMCC1716, beta proteobacterium d8-2, strain d8-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.